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Origin of Alzheimer’s Gene Mutation Discovered

UCSB researcher tracks source of inherited gene mutation to a single founder dating from early Habsburg Spain
Wednesday, December 4, 2013 - 10:00
Santa Barbara, CA

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Map of gene mutation origin

(A–D) Geographic origin of the haplotype spanning E280 A. 

PSEN1_Figure 2.jpg

Minimal haplotype containing E280 A

All carriers of E280 A share a minimal common haplotype spanning 1.8 Mb surrounding presenilin 1 E280 A from rs2158987 to rs10135303 (chromosome 14). Positions are given in GRCh37 coordinates.

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Kenneth S. Kosik

Kenneth S. Kosik

The age and origin of the E280A gene mutation responsible for early-onset Alzheimer’s in a Colombian family with an unusually high incidence of the disease has been traced to a single founder dating from the 16th century.

Kenneth S. Kosik, Harriman Professor in Neuroscience at UC Santa Barbara and co-director of the campus’s Neuroscience Research Institute (NRI), conducted the study. The findings appear in the journal Alzheimer’s & Dementia.

“Some mutations just increase your risk, but this mutation is not a risk,” Kosik said. “This mutation is highly penetrant, which means that if you carry the mutation, you will get early-onset Alzheimer’s disease.”

Kosik’s team sequenced the genomes of more than 100 family members and applied identity-by-descent analysis to identify regions of common ancestry. DNA is inherited from both the parents and recombined in chunks. From these pieces, scientists can identify which parent —and sometimes which grandparent or great-grandparent — is the source of the DNA. As time goes by, sections of DNA recombine into smaller and smaller segments, each representing a history of its ancestry.

Sequencing the genomes came about because the researchers knew that while most family members with the mutation develop early-onset Alzheimer’s at age 45, there were a small number of outliers. “A few people got it a decade later, a few got it a decade earlier and we wondered if there was a gene that was protecting those who got the disease later,” Kosik explained. “That protective gene — even though this mutation exists only in this Colombian family —might be useful for all of us. That research is still ongoing.”

Out of the genome sequencing came the idea of determining where the gene mutation originated. In addition to DNA analysis, the researchers conducted interviews with the older healthy individuals of each affected family and spoke to genealogists and historians in Colombia’s Antioquian region. Kosik’s co-author Francisco Lopera examined local historical and genealogical books, last wills and ecclesiastical records dating as far back as 1540.  

When the scientists examined the DNA patterns around the gene mutation site, they found markers from the Iberian peninsula. They estimated the age and geographic origin of E280A to be consistent with a single founder dating from the time of the Spanish Conquistadors who began colonizing Colombia during the early 16th century.

“This doesn’t have big medical implications, but it shows that genetics is a very powerful tool and can be used to reconstruct history,” Kosik said. “What we’ve done here might be called ‘neuroarchaeology.’ ”

Support for this work came from a National Institutes of Health Fogarty grant, the Errett Fisher Foundation and the University of Luxembourg-Institute for Systems Biology program Colciencias.

Contact Info: 

Julie Cohen
julie.cohen@ucsb.edu
(805) 893-7220

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