Songi Han is a recipient of the 2004 Camille and Henry Dreyfus New Faculty Award, the 2007 NSF Faculty Early Career Development Award, the 2008 Packard Fellowship for Science and Engineering, the 2010 Dreyfus-Teacher Scholar Award, the 2011 NIH Innovator Award and the 2015 Bessel Prize of the Alexander von Humboldt Foundation and the BPS Innovation Award of 2018.